Just some quick recommendations:
Gliding - Razanak7 pulled it off with his Dark Link, so it may be possible on Goku. Might be easier for the Pit port since Pit already has gliding. As for the Glide itself, minimal speed and height

, to simulate flying.
On Hit Cancel -
For DBZ-esque combos. Then Side-B could become a different move.
A faster Kamehameha (beam speed), but less damage in exchange. Not a whole lot faster, but it just feels a little too slow. Also would be nice to be able to store it like the Charge Beam (Though maybe give it a time limit).
A different Down-B (at least on the ground). Maybe a Counter type move, or a Dragon Fist-ish launcher.
An option to not hear "Over here!" every time he uses Up-B.
Maybe make the F-air fire three quick Ki blasts, and give the D-Air the spike.