I was having the same problem with Windows Vista and today switched to Windows 7, nothing changed. If i were to guess as to why this is happening, it has something to do with DasDonkey because i just exported my vertex.ddf and my model.mdl0 and immediately after creating a 3ds file with DD i used DD to make a new model.mdl0 with the non-altered files. The problem of course was still there.
I don't know if that helps anyone but that's the lead I'm going with right now. I don't know if it is different for anyone else.
-Tyler
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